FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005788427

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788427
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71710415
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGTCG206750.066.06142494
CAAGTCG377600.059.13585394
AAAGTCG279050.051.67389794
GAAGTCG465300.049.2121294
ATAAGTC280400.015.65549394
ACAAGTC458550.014.50332694
CTAAGTC264500.012.75841294
GCAAGTC462450.012.13493394
CGAAGTC219500.011.94806394
TTAAGTC312650.011.33471994
GGAAGTC684200.011.28631994
CCAAGTC651100.010.66180294
AGAAGTC784850.010.4018694
TCAAGTC490400.09.98654194
GTAAGTC364650.09.95036394
TGAAGTC760100.08.34140294
GAAAGTC520150.08.10516294
GCGAAGT126000.07.68412794
CAAAGTC714200.07.403388594
AAAAGTC592650.06.661604494
Produced by FastQC (version 0.11.5)