FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005788429

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788429
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72125133
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGTCG164100.066.1608794
CAAGTCG363200.054.49256594
AAAGTCG243000.045.31728494
GAAGTCG494000.043.17530494
ATAAGTC219900.014.85447894
CTAAGTC235750.014.27444494
ACAAGTC410850.013.2586194
GCAAGTC449750.011.68337994
TTAAGTC237000.011.24430494
CGAAGTC257400.011.21134494
GTAAGTC306550.010.24172294
GGAAGTC703250.09.98478594
TCAAGTC443950.09.8245394
AGAAGTC756550.09.77212394
CCAAGTC668850.09.61291794
TGAAGTC715400.07.73259794
CAAAGTC649200.07.341035494
GAAAGTC450000.07.206666594
GCGAAGT143750.06.86608794
TAAAGTC273200.06.64055694
Produced by FastQC (version 0.11.5)