FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005788430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72125133
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGTCG174650.065.12453594
CAAGTCG365900.053.1656294
AAAGTCG236050.044.1029494
GAAGTCG473950.041.43179394
ATAAGTC217100.016.25840494
ACAAGTC413450.013.44805994
CTAAGTC241100.012.98299594
GCAAGTC447750.011.64109394
TTAAGTC235150.010.77312394
CGAAGTC246100.010.16009794
GGAAGTC679350.010.01781194
GTAAGTC313000.09.92555894
AGAAGTC730000.09.59958894
TCAAGTC456600.09.59351794
CCAAGTC684000.09.48245594
TGAAGTC695300.07.408600394
GATCGTA56550.07.313881494
GAAAGTC438400.06.947079794
CAAAGTC645100.06.62269494
TAAAGTC274250.06.529443794
Produced by FastQC (version 0.11.5)