FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005788470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61489520
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGTCG189050.071.152694
CAAGTCG301750.060.41855294
AAAGTCG184150.044.20526594
GAAGTCG313100.043.18715794
ATAAGTC287150.021.34354894
ACAAGTC417250.015.89382894
CTAAGTC225250.011.4135494
GTAAGTC296300.011.32568494
GCAAGTC369400.010.94206894
TTAAGTC259650.010.89697694
AGAAGTC641450.010.08948494
TCAAGTC477350.09.1863494
GGAAGTC535850.08.73602794
CCAAGTC556500.08.2767394
GATAAGT209900.08.12815694
CATAAGT223350.07.912245894
CGAAGTC152850.07.07229394
GATCGTA46400.06.68534494
AAAAGTC496050.06.61344694
AATAAGT384500.06.050715494
Produced by FastQC (version 0.11.5)