FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005788474

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788474
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48877270
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGTCG48400.020.29545694
AAGTCGG141650.019.94140694
CAAGTCG105950.08.60594794
AAAGTCG92800.06.381465494
GAAGTCG176950.06.029387594
Produced by FastQC (version 0.11.5)