FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005788492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70901888
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGTCG157700.063.7197294
CAAGTCG322650.054.48008794
GAAGTCG434150.043.95255394
AAAGTCG228800.042.152194
ATAAGTC238250.014.87429194
ACAAGTC415150.013.07599694
CTAAGTC238100.011.44897294
GCAAGTC427250.010.186542594
TTAAGTC252650.09.58044794
CGAAGTC220150.09.56438894
AGAAGTC741350.09.50967994
GGAAGTC670950.09.36567694
GTAAGTC311450.09.09969594
CCAAGTC639150.09.09629994
TCAAGTC447350.08.54163594
TGAAGTC712100.07.11501294
GAAAGTC452150.06.29923794
GCGAAGT131400.06.062785692-93
CAAAGTC656700.06.047662794
AAAAGTC517650.05.72916194
Produced by FastQC (version 0.11.5)