FastQCFastQC Report
Sun 5 May 2024
EGAF00005789322

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005789322
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520897865
Total Bases78.6 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTATG23936130.4595167615056361TruSeq Adapter, Index 7 (97% over 34bp)
CCCGAGAGATCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT23587900.45283157380574024No Hit
CCCGAGAGATCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA17148400.3292084908046225No Hit
CCCGAGAGATCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5621030.10791040581439126No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)