FastQCFastQC Report
Tue 7 May 2024
EGAF00005790766

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005790766
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15973623
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length35-151
%GC48

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTAGCCCTGTCATTCTAGGAGTTTATTATCCTTCAGACACAGCTACTTA723620.45300931416748724No Hit
CTGATTGATGTTTAGCTCTAGACTAAGTTGCTTTCAAGTGATAACTGTCT420320.2631337925028029No Hit
GCCACTTGATTTCTTTTCCTTTCTCTCTCTACCAATATTAAGCCTTAGTG283190.17728601707953168No Hit
AGAAAGAATAAGCATGTTACCTTAAGATCAACCACCATGGACTGAACAAG273650.171313671294233No Hit
AGATGTTTGGAGCTTTGGAGTGGTTCTGTATCNNN256100.16032680876467412No Hit
CTGACGGCCATGTCTTCCTTTGGCCACAGGACGCTGTGCAGAGCTGCAAG189910.11888974717883351No Hit
TACTAGTCGAAAGCGGCCCCGTGAAGGGGAAGCCGAGGGTGCCGAGACCA164950.10326398713679422No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)