FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005790766

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005790766
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15973623
Sequences flagged as poor quality0
Sequence length35-151
%GC48

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTAGCCCTGTCATTCTAGGAGTTTATTATCCTTCAGACACAGCTACTTA710690.4449147197226328No Hit
CTGATTGATGTTTAGCTCTAGACTAAGTTGCTTTCAAGTGATAACTGTCT415050.2598346035836704No Hit
GCCACTTGATTTCTTTTCCTTTCTCTCTCTACCAATATTAAGCCTTAGTG278480.17433740611006032No Hit
AGAAAGAATAAGCATGTTACCTTAAGATCAACCACCATGGACTGAACAAG271360.16988005789294014No Hit
AGATGTTTGGAGCTTTGGAGTGGTTCTGTATCNNN256100.16032680876467412No Hit
CTGACGGCCATGTCTTCCTTTGGCCACAGGACGCTGTGCAGAGCTGCAAG187380.11730588608482873No Hit
TACTAGTCGAAAGCGGCCCCGTGAAGGGGAAGCCGAGGGTGCCGAGACCA163470.10233745969840403No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)