EGAF00005790832 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005790832
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4830935
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTAGCCCTGTCATTCTAGGAGTTTATTATCCTTCAGACACAGCTACTTA	20982	0.4343258603148252	No Hit
GGGCATCGGCATCGGCATGTCGGCGCGGTTCGCCGAGGTGTCGATGATGC	9916	0.2052604723516255	No Hit
AGAAAGAATAAGCATGTTACCTTAAGATCAACCACCATGGACTGAACAAG	9861	0.20412197638759372	No Hit
CGGCGGCTGGTAAGGGAAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCC	9676	0.20029248996312307	No Hit
GCCGCCAAGGAGCGGGAGATCCATCGCAAGCTGCAAGCGTTCTGCGCAAG	9373	0.19402041219763877	No Hit
AGATGTTTGGAGCTTTGGAGTGGTTCTGTATCNNN	8978	0.1858439411832285	No Hit
GCCACTTGATTTCTTTTCCTTTCTCTCTCTACCAATATTAAGCCTTAGTG	8415	0.17418988249686654	No Hit
CGGCGGCTGGTAAGGGAAGAGGGCATCTTCTGCGGCGTTTCGTCTGGCGG	8116	0.16800060443785725	No Hit
TACTAGTCGAAAGCGGCCCCGTGAAGGGGAAGCCGAGGGTGCCGAGACCA	6721	0.13912420680468687	No Hit
CTGATTGATGTTTAGCTCTAGACTAAGTTGCTTTCAAGTGATAACTGTCT	6625	0.13713701384928592	No Hit
CTTTCGTGTTCAAACCACGGAGTTCACAACACAGCAGCACACACAGCCGG	6444	0.13339032713129031	No Hit
CTGACGGCCATGTCTTCCTTTGGCCACAGGACGCTGTGCGGAGCTGCAAG	5594	0.1157953895053442	No Hit
CAGTCAGCCTGCAGATGTGGATCTAATGATTGACTGCCTTGTTTCTTGCC	5223	0.10811571672978419	No Hit
AAAGAGCATTTGACTAACCTTATTACAGTGACGCCCAATACCCATTAGGA	5090	0.1053626264894891	No Hit
GGCTTATGTCTAAGTTTTTCAAGCACAGGGTAGAATATTGGGCTGAGTAA	5088	0.10532122663625158	No Hit
ACCTGACGGGTATCTTCATGCACGGCAAGATCCCCACGCTGAAGATCTCT	5075	0.1050521275902077	No Hit
CATTTCTCTCATTAGCCCGGTTTTCAGATACTCAATACCAAAGAATTGAA	4969	0.10285793536861912	No Hit
CTGGGCTCATGTGACCTACTGCCTTGGCCTCCCAAAGTGCTGGGATTACA	4885	0.10111914153264326	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGACGTA	640	106.95791	5
TAGTCGA	1880	105.150116	4
CGTGAGT	405	100.6031	145
TAGCGGC	2475	100.28044	8
CGTTGCG	1705	93.42952	5
TGACCGA	2585	91.311516	9
AGTCGAA	2215	89.24705	5
CGTACCC	710	89.206184	1
GCTAGCC	3475	88.00173	1
GCCCGAT	2675	87.055405	1
CTAGTCG	2275	86.612076	3
CGCGTGT	375	86.015656	145
CCGATGT	2780	84.22585	3
TCAACCG	790	83.80939	145
AGTGTCG	2770	83.59658	7
CGGATCT	880	83.59395	7
CGCACGT	835	81.21524	1
TGTCGAC	2855	80.88366	9
GGTAGCG	3100	80.48447	6
GTTCCGT	600	79.96854	5