FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005790872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005790872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4723245
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTAGCCCTGTCATTCTAGGAGTTTATTATCCTTCAGACACAGCTACTTA155140.3284606239989668No Hit
CGGCGGCTGGTAAGGGAAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCC126860.2685865331991036No Hit
CTGATTGATGTTTAGCTCTAGACTAAGTTGCTTTCAAGTGATAACTGTCT121020.25622215235500173No Hit
GCCGCCAAGGAGCGGGAGATCCATCGCAAGCTGCAAGCGTTCTGCGCAAG109940.23276370376721936No Hit
CGGCGGCTGGTAAGGGAAGAGGGCATCTTCTGCGGCGTTTCGTCTGGCGG103650.2194465880978014No Hit
GGGCATCGGCATCGGCATGTCGGCGCGGTTCGCCGAGGTGTCGATGATGC91540.19380743535429562No Hit
AGAAAGAATAAGCATGTTACCTTAAGATCAACCACCATGGACTGAACAAG84780.17949524108954754No Hit
TACTAGTCGAAAGCGGCCCCGTGAAGGGGAAGCCGAGGGTGCCGAGACCA79290.1678718762206915No Hit
CTGTGTTCTTAGGCGGTATCACCNNNNNNNNNNNN66920.14168225446700308No Hit
CTTTCGTGTTCAAACCACGGAGTTCACAACACAGCAGCACACACAGCCGG65390.13844295606092843No Hit
GAACAGGTCGGCCAGGAACTCGTCGGTGGTCTTCTGGATCACCTGATGCG61660.13054584295330857No Hit
GCCACTTGATTTCTTTTCCTTTCTCTCTCTACCAATATTAAGCCTTAGTG60530.1281534199475149No Hit
GTCTGAGGAAAATGAATCCACAGCTCTACCCCAGGTTCTAGCCCAGGTAT50610.1071509100205473No Hit
CTGGGCTCATGTGACCTACTGCCTTGGCCTCCCAAAGTGCTGGGATTACA49730.10528778413992923No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)