FastQCFastQC Report
Tue 26 Apr 2022
EGAF00005791456

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005791456
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71288852
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCATCAAGTATCTCGTAT15890142.228979644671512TruSeq Adapter, Index 9 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCATCAAGTATCGCGTAT2086030.29261657909710764TruSeq Adapter, Index 9 (97% over 38bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCATCAAGTATCTCGTA1061320.14887601219893398TruSeq Adapter, Index 9 (97% over 38bp)
GCCCGCTCTCCCAGTCATCACAGTCTGGTTTCTTGATATCCTGAAGGAAG915520.12842400660344483No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)