FastQCFastQC Report
Thu 21 Jul 2022
EGAF00005791664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005791664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28606303
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAGAATCTCGTAT665810.23274940491261664TruSeq Adapter, Index 15 (97% over 40bp)
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT429510.15014523197912014No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT399880.13978737483134399No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT308390.10780491278443076No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)