FastQCFastQC Report
Sun 24 Jul 2022
EGAF00005791681

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005791681
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36067199
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG391181210.84589906746016Illumina Single End PCR Primer 1 (100% over 50bp)
TGCGTGCATTTATCAGATCAAAACCAACCCGGTAGCCCCTCTCCGGCCCC614640.1704152296384313No Hit
GATGCGTGCATTTATCAGATCAAAACCAACCCGGTAGCCCCTCTCCGGCC581980.16135991042720008No Hit
GTGCATTTATCAGATCAAAACCAACCCGGTAGCCCCTCTCCGGCCCCGGC567660.15738954389000376No Hit
CGTGCATTTATCAGATCAAAACCAACCCGGTAGCCCCTCTCCGGCCCCGG462480.12822731257839012No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)