FastQCFastQC Report
Sun 24 Jul 2022
EGAF00005791686

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005791686
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21452804
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGC493420.230002567496538TruSeq Adapter, Index 9 (100% over 50bp)
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT320840.14955620719790289No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT280630.13081273664738652No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT271210.1264217022632566No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)