FastQCFastQC Report
Thu 21 Jul 2022
EGAF00005791699

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005791699
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33144740
Sequences flagged as poor quality0
Sequence length76
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG8707072.626983949791128Illumina Single End PCR Primer 1 (100% over 50bp)
GGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCC567320.1711644140216517No Hit
CCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGC527460.15913837308725304No Hit
GCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCC477350.14401983542486682No Hit
CGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCG365130.11016227612586492No Hit
GGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGC361520.10907311386361758No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)