FastQCFastQC Report
Tue 26 Jul 2022
EGAF00005791726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005791726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36947984
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT516400.1397640531618721No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT433290.11727026838595578No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT413920.1120277631385788No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)