FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005797266

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797266
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78441006
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGATC88450.010.4713134-35
TTGTACT415500.09.9240492
CTTGTAC357200.09.8305261
GTACTGT315550.09.7098154
CGATCTA50300.08.40388636-37
TTCCGAT112200.07.894964734-35
TGTACTG445800.07.73612453
GATCGGA191750.07.176451794-95
TCAGACG175950.06.978086520-21
AGATCGG243050.06.805815794-95
CCGATCT133350.06.802968536-37
TAGATCG74950.06.6273794-95
TACTGTG492800.05.9281235
ATCGGAA192900.05.83999894-95
Produced by FastQC (version 0.11.5)