FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005797267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76253748
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA173250.016.1102451
TCGTATG96550.014.90595844-45
ATCGGAA191600.014.7027622
CGTATGC102150.014.08865546-47
CTCGTAT101750.013.91077744-45
TATGCCG105950.013.583302548-49
TCTCGTA143700.09.93263542-43
TCGGAAG296250.09.8457523
CGGAAGA363700.08.1765254
ATCTCGT184250.08.01732942-43
ATGCCGT191850.08.00896248-49
CGTCTGA198200.07.57260416-17
ACACGTC218500.07.031972412-13
GTATGCC236050.06.53950146-47
GCCGTCT248200.06.38201650-51
TCCGATC73850.06.36693956
ACGTCTG246150.06.319329714-15
CCGTCTT262500.06.25150152-53
TGCCGTC266350.06.000621350-51
CATCTCG275400.05.73469240-41
Produced by FastQC (version 0.11.5)