FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005797272

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797272
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77887817
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCGCAC109850.028.6782191
TCGCACC185450.025.4883882
CGCACCG159650.019.0730883
ATCGCAC100750.012.9224321
GCACCGT259150.08.3403394
TCCGATC85850.08.2988834-35
TCGCAAC65050.08.2523422
CGATCTA50900.07.32510136-37
ACCGTGA226100.07.2270416
CCGTGAC227200.06.71093277
CGCACCC302150.06.24165533
ACCGCGA101750.06.0689226
TTCCGAT108700.05.68044434-35
TCAGACG171500.05.677502620-21
CGCAACG58050.05.64649253
CGTGACT169950.05.56165278
CCGATCT121550.05.5487536-37
Produced by FastQC (version 0.11.5)