FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005797276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69837245
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA116150.011.9401011
CGCCGTA55400.011.31753558-59
ATCGGAA133400.010.5031592
GCCGTAT66500.09.321300558-59
CGTATCA70500.08.75888460-61
AGAGCGT178550.07.81937558
GAGCGTC182750.07.61357989
GCGTCGT88150.07.51544710-11
CCGTATC84800.07.421890360-61
AAGAGCG210350.06.90799957
AGCGTCG103950.06.647241610-11
TCGCCGT98650.06.644918456-57
TCGGAAG229000.06.40885973
TCGTGTA103400.06.316387714-15
CGTCGTG107050.06.27775512-13
GTCGCCG121300.05.815315256-57
TGGTCGC128650.05.501484454-55
GTCGTGT124550.05.45289212-13
CGTGTAG136800.05.242970514-15
CGGAAGA298250.05.2073454
Produced by FastQC (version 0.11.5)