EGAF00005797281 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005797281
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	75505172
Sequences flagged as poor quality	0
Sequence length	101
%GC	50

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCAGA	39780	0.0	26.56094	1
GCGTTAA	5585	0.0	9.993541	36-37
CGGCAGG	47245	0.0	8.73238	1
GATCGGA	11865	0.0	8.292231	1
CGTTAAT	7035	0.0	7.8662276	36-37
AGCGTTA	7400	0.0	7.863386	34-35
ATCGGAA	13960	0.0	7.7928114	2
TCGTATG	8130	0.0	7.3906403	44-45
GGCAGAT	67410	0.0	7.2727637	2
GCAGATA	39150	0.0	7.1825047	3
TATGCCG	8375	0.0	7.0325727	48-49
CTCGTAT	8340	0.0	6.976733	44-45
CGTATGC	8455	0.0	6.966031	46-47
CGGCCGA	16750	0.0	5.87387	1
CGCTAAT	4255	0.0	5.6969104	1
AATCTCG	11820	0.0	5.344705	40-41
TCGGAAG	23635	0.0	5.2654037	3
TCTCGTA	12200	0.0	5.041953	42-43