FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005797284

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797284
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37012719
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA55300.09.5321091
ATCGGAA64150.08.6609762
AGAGCGT93450.05.99781478
GAGCGTC99050.05.99442679
AATTCGT44300.05.896840636-37
GCGTCGT49900.05.47316910-11
AGCGTCG51550.05.251915510-11
GAATTCG53350.05.163567534-35
ATTCGTG50150.05.161619736-37
TCGTGTA53650.05.046137314-15
Produced by FastQC (version 0.11.5)