FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005797314

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797314
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78235141
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATTAGG253350.025.22032
ATTAGGG277550.021.103753
GGATTAG257700.018.5120741
TAGGGTG359250.015.41776855
TCCGATC111050.014.8414834-35
TTAGGGT315600.014.3294564
CGATCTA60850.012.80098236-37
TTCCGAT132050.011.29425334-35
CCGATCT150150.010.66018136-37
TCAGACG184200.010.12084120-21
GACGTGT202850.07.750380522-23
CGATTAG41050.07.5237781
GGGTGAC700150.07.13029967
TAGGGGG309900.06.9437865
AGGGTGA859050.06.7405456
CTTCCGA246650.06.701622532-33
CAGACGT232850.06.282623320-21
GGTGACT609700.06.25574648
AGATTAG254500.06.0304611
ACGTGTG288400.05.68192624-25
Produced by FastQC (version 0.11.5)