FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005797339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797339
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64387109
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA92000.011.1591011
ATCGGAA110050.010.0556542
TCGTATG69550.07.85366744-45
CGTATGC76200.07.44870346-47
TATGCCG72350.07.352617348-49
CTCGTAT75250.07.19565144-45
TCGGAAG198000.05.92482043
TCCGATC65100.05.61763056
TCTCGTA107050.05.413197542-43
Produced by FastQC (version 0.11.5)