FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005797346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences136994674
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCTTAG517150.014.4697462
GACCTTA431800.013.6903061
CTTAGGT488850.010.89530854
CCTTAGG633150.09.9208093
TCCGATC159950.09.66605434-35
TTAGGTG528300.09.3440735
CGATCTA93300.08.32379636-37
TTCCGAT203450.07.144078734-35
TAGGTGA757900.06.72510156
CCGATCT233900.06.396842536-37
TCAGACG300250.06.296583720-21
ACCGTAG144950.05.1133232
Produced by FastQC (version 0.11.5)