FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005797353

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797353
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69263219
Sequences flagged as poor quality0
Sequence length101
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCAGA379600.026.1742291
GCAGATA379550.010.4122133
GATCGGA108400.010.3499111
GGCAGAT634100.09.431212
ATCGGAA130450.08.5934462
TCGTATG72550.07.98724644-45
CGGTAAT71150.07.710769736-37
CGTATGC78250.07.52682846-47
CTCGTAT78700.07.453613344-45
TATGCCG77850.07.38246548-49
TCGGTAA85850.07.16506536-37
ACGCTCG86450.06.785591632-33
TCGGAAG217700.05.76015663
TCCGATC72600.05.75738246
CAGATAC393200.05.5809544
AATCTCG112150.05.484679740-41
TCTCGTA113150.05.43614242-43
CTCGGTA117950.05.27548934-35
Produced by FastQC (version 0.11.5)