EGAF00005797356 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005797356
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	73591528
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	12240	0.0	9.896607	1
ATCGGAA	13945	0.0	9.027387	2
CGCCGTA	5695	0.0	8.298758	58-59
GCCGTAT	6715	0.0	7.604072	58-59
CGTATCA	7380	0.0	6.725807	60-61
AGAGCGT	18790	0.0	6.1939683	8
CCGTATC	8755	0.0	5.9136395	60-61
GCGTCGT	9355	0.0	5.814189	10-11
GAGCGTC	19645	0.0	5.77926	9
AAGAGCG	21960	0.0	5.6460023	7
AATTCGT	9910	0.0	5.5602164	36-37
TCGGAAG	24845	0.0	5.5065985	3
TCGTGTA	12145	0.0	5.2801757	38-39
TCGCCGT	10560	0.0	5.2176795	56-57
CGTCGTG	11125	0.0	5.1664395	12-13
AGCGTCG	10735	0.0	5.155269	10-11
ATTCGTG	11525	0.0	5.1520066	36-37
GAATTCG	11075	0.0	5.1254215	34-35