EGAF00005797408 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005797408
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	73710330
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	12990	0.0	9.725682	1
CGCCGTA	5685	0.0	9.065592	58-59
ATCGGAA	14535	0.0	8.692084	2
GCCGTAT	6975	0.0	7.6272974	58-59
CGTATCA	7600	0.0	7.1876125	60-61
AGAGCGT	18890	0.0	6.43572	8
GCGTCGT	9295	0.0	6.386461	10-11
CCGTATC	8930	0.0	6.2500987	60-61
GAGCGTC	20685	0.0	6.014884	9
AAGAGCG	22750	0.0	5.9698505	7
TCGCCGT	10405	0.0	5.615356	56-57
TCGTGTA	10920	0.0	5.5893307	14-15
AGCGTCG	10995	0.0	5.5069942	10-11
CGTCGTG	11080	0.0	5.379404	12-13
TCGGAAG	25285	0.0	5.2596316	3
GTCGTGT	12395	0.0	5.0194364	12-13