FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005797420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80481813
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGATC102600.012.05946134-35
CGATCTA54100.09.43786436-37
TTCCGAT123400.08.98750834-35
CCGATCT143850.07.74275536-37
TCAGACG184200.07.323142520-21
GATCGGA213450.05.64516394-95
CTTCCGA249300.05.239491532-33
GACGTGT200900.05.118585622-23
ATCGGAA218500.05.090484694-95
Produced by FastQC (version 0.11.5)