FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005797422

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797422
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences142612513
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATACGT163950.027.3268762
TGATACG165300.024.032761
ATACGTG222650.016.0261963
TACGTGT285400.010.7043054
AGATACG179800.09.4615771
CGATACG51050.08.8429671
GATACGA109100.07.5772962
ATACGCG40900.07.3186413
CGTGTGA358550.07.1938066
ATACGTT146950.06.11090333
ATACGTA140950.05.7979783
GATACGC103150.05.75745442
TCCGATC148200.05.656898534-35
ACGTGTG505000.05.5508035
ATACGTC102750.05.50273133
ATACGAG121500.05.47475863
TACGCGT54200.05.4349294
CGATCTA87350.05.274664436-37
TACGTAT143900.05.01861954
Produced by FastQC (version 0.11.5)