FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005797424

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797424
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67874080
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA111350.09.8532651
CGCCGTA47000.09.39941958-59
ATCGGAA127300.08.7680872
CGAGTAA68450.07.806695532-33
GCCGTAT61550.07.331814358-59
CGTATCA67250.06.88699660-61
TCGAGTA79450.06.69595232-33
GTCGAGT78150.06.503363630-31
GCGTCGT82400.06.196027810-11
GAGCGTC170500.06.15587959
AGAGCGT173000.06.1218628
GTGTCGA92600.05.821871828-29
CCGTATC81600.05.675863360-61
AAGAGCG204450.05.55174457
CGTCGTG100600.05.54744112-13
TCGGAAG218700.05.45121053
AGCGTCG97850.05.436123410-11
TGTCGAG104800.05.348154530-31
TCGCCGT89950.05.333902456-57
TCGTGTA97450.05.264127714-15
Produced by FastQC (version 0.11.5)