EGAF00005797425 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005797425
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	78089915
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	15180	0.0	11.147612	1
ACGTATC	8815	0.0	9.969035	34-35
CGTATCA	8720	0.0	9.886984	34-35
TATGCCG	8825	0.0	9.876285	48-49
ATCGGAA	17360	0.0	9.796877	2
TCGTATG	8860	0.0	9.783837	44-45
CTCGTAT	8915	0.0	9.590279	44-45
CGTATGC	9400	0.0	9.145827	46-47
CACGTAT	12985	0.0	6.9687443	32-33
AATCTCG	12710	0.0	6.8016863	40-41
TCTCGTA	13225	0.0	6.644556	42-43
TCGGAAG	27205	0.0	6.564811	3
TCCGATC	7720	0.0	5.7834682	6
ATCTCGT	16325	0.0	5.5282836	42-43
ACACGTA	16675	0.0	5.4551215	32-33
ATGCCGT	18160	0.0	5.3356414	48-49
CGGAAGA	35010	0.0	5.331854	4
CGTCTGA	17920	0.0	5.1022887	16-17