FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005797426

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797426
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78089915
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA62850.010.54309858-59
GATCGGA153950.09.7504391
GCCGTAT74200.09.18644158-59
ATCGGAA173100.08.8365062
CGTATCA79600.08.53350560-61
AATTCGT105650.07.418541436-37
CCGTATC98650.06.98192960-61
AGAGCGT220400.06.93901448
ATTCGTG116650.06.861502636-37
GAGCGTC225800.06.85720549
GAATTCG116450.06.852724634-35
TCGCCGT112100.06.35611456-57
GCGTCGT112000.06.27642910-11
AAGAGCG256850.06.26851227
AGCGTCG130500.05.85982110-11
TCGGAAG280200.05.81496243
GTCGCCG140500.05.6122656-57
CGTCGTG134000.05.529754612-13
TCGTGTA144700.05.465834638-39
GTCGTGT142700.05.20926512-13
Produced by FastQC (version 0.11.5)