EGAF00005797430 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005797430
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	76708197
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	12920	0.0	10.260923	1
ATCGGAA	14535	0.0	9.250649	2
CGCCGTA	6225	0.0	8.202497	58-59
CGAGTAA	7520	0.0	8.148091	32-33
GCCGTAT	7130	0.0	7.6609964	58-59
CGTATCA	7310	0.0	7.3424187	60-61
TCGAGTA	8860	0.0	6.888957	32-33
AGAGCGT	19920	0.0	6.629581	8
GTCGAGT	9030	0.0	6.548793	30-31
GCGTCGT	9345	0.0	6.5320544	10-11
GAGCGTC	20585	0.0	6.4845834	9
CCGTATC	9085	0.0	6.247713	60-61
GTGTCGA	10750	0.0	5.9207673	28-29
AAGAGCG	24420	0.0	5.73867	7
AGCGTCG	11265	0.0	5.735003	10-11
TCGGAAG	25790	0.0	5.5267186	3
CGTCGTG	11515	0.0	5.424592	12-13
TCGTGTA	11205	0.0	5.3625255	14-15
TGTCGAG	12235	0.0	5.2991757	30-31