FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005797436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78046528
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACGACG79950.036.9608043
CTACGAC167000.023.2989652
ACGACGT93800.019.2463724
TCTACGA140300.019.0740531
ATACGAC51200.012.5265952
TACGACC91350.011.3375043
ACTACGA125400.010.9924051
TACGACA98450.09.8925363
CGACGTG162150.09.5220225
TTACGAC55450.08.2250572
CTACGAA90750.06.70089052
ACGACGA118650.06.5666554
TCCGATC82400.06.513802534-35
GACGTGA208600.06.51214936
ACGACGG97500.06.33441974
ACGTGAC187400.06.3109327
TATACGA52300.06.27104141
ACGACGC82350.06.23057654
CGACGTA36550.05.97906455
TAAGACG77550.05.81984333
Produced by FastQC (version 0.11.5)