FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005797445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73332938
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCAGA385500.023.2818781
GATCGGA130550.014.7917531
ATCGGAA146500.013.3609562
TCGTATG83900.011.83198744-45
TATGCCG87450.011.27013248-49
CGTATGC89300.011.16964346-47
CTCGTAT88900.010.81923744-45
GCAGATA379850.08.6921563
AATCTCG118950.08.32575440-41
TCGGAAG250800.08.2208573
TCTCGTA124400.07.69361742-43
GGCAGAT663750.07.4726372
CGGAAGA330800.06.46246624
ATCTCGT160650.06.28281342-43
ACTAATC167050.06.08493138-39
CGTCTGA168350.06.037660616-17
ATGCCGT177100.05.96735948-49
ACACGTC190100.05.54676612-13
TCCGATC78850.05.5421686
GTATGCC214000.05.215855646-47
Produced by FastQC (version 0.11.5)