FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005797453

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797453
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences89638001
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA148350.014.3231381
CGTCTAA85350.012.57841836-37
ATCGGAA173450.012.2411252
TCGTATG102150.010.50853844-45
CGTATGC107300.010.24751946-47
CTCGTAT105050.010.21844144-45
TATGCCG105000.010.11005748-49
CCGTCTA113400.09.82312834-35
TCGGAAG292150.07.80396843
TCTCGTA151850.07.350704742-43
AATCTCG153300.07.033503540-41
CGGAAGA379050.06.2278634
CGTCTGA199200.05.98485816-17
TCCGATC90050.05.80213936
ATCTCGT197900.05.628244442-43
ATGCCGT212450.05.555651748-49
CACTCCG230250.05.30188430-31
ACACGTC233950.05.28875512-13
GTCTAAT235400.05.15591236-37
ACTCCGT247450.05.000695732-33
Produced by FastQC (version 0.11.5)