EGAF00005797454 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005797454
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	89638001
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	15410	0.0	11.097701	1
ATCGGAA	17670	0.0	9.893523	2
CGCCGTA	7020	0.0	9.439004	58-59
GCCGTAT	8460	0.0	8.506117	58-59
CGTATCA	8910	0.0	7.703207	60-61
AGAGCGT	23520	0.0	7.271115	8
GCGTCGT	11590	0.0	6.9678206	10-11
AAGAGCG	27780	0.0	6.58358	7
GAGCGTC	24820	0.0	6.545692	9
CCGTATC	11090	0.0	6.3816967	60-61
TCGGAAG	30845	0.0	6.2528577	3
AGCGTCG	13625	0.0	6.1886125	10-11
TCGTGTA	13505	0.0	6.014477	14-15
CGTCGTG	13875	0.0	5.8370695	12-13
TCGCCGT	13165	0.0	5.6827173	56-57
GTCGTGT	14865	0.0	5.6400537	12-13