FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005797460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72476648
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA122750.09.0166791
CGCCGTA53200.08.70527358-59
ATCGGAA138500.08.1627532
CGAGTAA74300.06.968351432-33
CGTATCA68500.06.864898760-61
GCCGTAT67600.06.815761658-59
GTCGAGT82950.06.38483930-31
TCCGATC77100.06.253196234-35
TCGAGTA81450.06.181689332-33
AGAGCGT183750.05.99678958
GAGCGTC185000.05.9563329
GCGTCGT90200.05.89771410-11
CCGTATC88200.05.57392760-61
AAGAGCG213250.05.54587757
CGATCTA46750.05.43591136-37
TCGGAAG236000.05.35398343
AGCGTCG102050.05.35250510-11
CGTCGTG109750.05.12857912-13
GTGTCGA99150.05.125952728-29
TCGCCGT97600.05.085847456-57
Produced by FastQC (version 0.11.5)