EGAF00005797466 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005797466
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	64807080
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	11645	0.0	8.484955	1
CGCCGTA	5045	0.0	8.23815	58-59
ATCGGAA	12795	0.0	8.019536	2
CGAGTAA	6730	0.0	7.234447	32-33
GCCGTAT	6185	0.0	7.1805005	58-59
CGTATCA	6410	0.0	6.8914094	60-61
GTCGAGT	7700	0.0	6.693119	30-31
TCGAGTA	7435	0.0	6.5804076	32-33
AGAGCGT	17395	0.0	6.1991835	8
GAGCGTC	17715	0.0	5.9798703	9
CCGTATC	8240	0.0	5.70678	60-61
GCGTCGT	8475	0.0	5.577141	10-11
AAGAGCG	20670	0.0	5.446819	7
TCGGAAG	22495	0.0	5.384994	3
TCGTGTA	9585	0.0	5.17868	14-15
GTGTCGA	9105	0.0	5.1647	28-29
TCGCCGT	9065	0.0	5.1088023	56-57
AGCGTCG	9870	0.0	5.029529	10-11