FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005797468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71816569
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA117200.010.0924491
ATCGGAA136050.08.5545932
CGCCGTA57250.08.37979158-59
GCCGTAT67150.07.108981658-59
CGTATCA72500.06.42054260-61
AGAGCGT181700.06.3008058
CGGTGTA89750.06.27169638-39
AAGAGCG211500.05.99697737
GAGCGTC190150.05.87085349
GCGTCGT87450.05.8395210-11
TCGGAAG235050.05.6790513
CCGTATC85650.05.628883460-61
AGCGTCG104350.05.62215710-11
TCGTGTA99150.05.437520514-15
CGTCGTG103500.05.11728812-13
Produced by FastQC (version 0.11.5)