FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005797485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71792107
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA111500.012.5807871
ATCGGAA130400.011.219532
TCGTATG79500.09.32020544-45
TATCTCG78400.08.99674740-41
TATGCCG84650.08.75317648-49
CGTATGC85350.08.62573546-47
CTCGTAT87100.08.5069644-45
TCGGAAG222000.06.93227963
TCTCGTA121500.06.078893742-43
CGGAAGA293700.05.38537744
TCCGATC72250.05.3250276
CGTCTGA156250.05.182894716-17
ATCTCGT157050.05.11115742-43
ATGCCGT158550.05.047794348-49
Produced by FastQC (version 0.11.5)