FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005797502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81536920
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTGTCGG208000.034.716362
GTCGGGT178400.028.8662054
GTTGTCG187300.026.036131
TGTCGGG320750.024.5717323
ATTGTCG95500.019.858041
TCGGGTG262950.019.0604295
CGGGTGA319300.012.7628756
TCCGATC100950.09.81032134-35
CGATCTA59150.09.79646936-37
TTCCGAT126200.07.71574734-35
TCAGACG186900.07.521956420-21
TTTGTCG115050.07.51885371
CCGATCT141950.07.143762636-37
TCGGGGG398700.06.44620945
GTCGGGG423950.06.4433014
TTATCGG55450.06.3399252
CGGGTTA68450.06.17556526
ATGTCGG174900.06.1386452
TAGTCGG74600.05.60399532
GGGTGAC717800.05.52507077
Produced by FastQC (version 0.11.5)