FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005797517

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797517
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70805724
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA108500.011.959661
ATCGGAA132000.010.2210382
TCGTATG73050.09.20063844-45
TATGCCG79450.08.69852248-49
CTCGTAT77050.08.69216944-45
CGTATGC80100.08.65758446-47
TCGGAAG224300.06.3530123
AATCTCG117750.06.13157340-41
TCTCGTA115950.05.91951242-43
TCCGATC68950.05.786676
CGGAAGA296050.05.2143724
Produced by FastQC (version 0.11.5)