EGAF00005797518 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005797518
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	70805724
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	11175	0.0	10.626607	1
CGCCGTA	5615	0.0	9.601537	58-59
ATCGGAA	13155	0.0	8.991181	2
CGTATCA	7005	0.0	7.9676514	60-61
GCCGTAT	7050	0.0	7.950373	58-59
AGAGCGT	17850	0.0	6.75849	8
CCGTATC	9020	0.0	6.6616926	60-61
AATTCGT	9285	0.0	6.4715524	36-37
ATTCGTG	9970	0.0	6.3604226	36-37
GAGCGTC	19050	0.0	6.3078537	9
GAATTCG	10480	0.0	5.982806	34-35
GCGTCGT	9125	0.0	5.959991	10-11
AAGAGCG	21625	0.0	5.8860917	7
TCGGAAG	23420	0.0	5.82108	3
AGCGTCG	10540	0.0	5.5429053	10-11
TCGCCGT	10075	0.0	5.51621	56-57
CGTCGTG	10585	0.0	5.4522595	12-13
TCGTGTA	11775	0.0	5.4460397	38-39
GTCGTGT	11895	0.0	5.071429	12-13