FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005797525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77501854
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGGAG283600.011.2795821
TCCGGGG337450.010.47967151
GATCGGA115350.010.2192321
TCCGGCG126150.010.2109511
ATCGGAA141650.08.6506722
CGCATAC77550.07.963054734-35
TATGCCG82100.07.896909748-49
TCGTATG83000.07.55388844-45
CCGCATA85150.07.168644432-33
CTCGTAT87500.07.002552544-45
CGTATGC92300.06.998553846-47
CCGGAGA262150.06.1236952
TCCGATC76100.05.61698346
TCGGAAG245900.05.56261833
AATCTCG125500.05.185193540-41
CCGGCGA115050.05.1602422
TCTCGTA126800.05.094502442-43
Produced by FastQC (version 0.11.5)