FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005797534

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797534
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31822652
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCGATC45850.07.5664211
GATCGGA45300.07.23865561
GCGATCT70500.07.07555342
CGATCTG68100.07.04582363
ATCGGAA51500.06.36505372
CGATCCG20301.6842023E-85.85061453
CGATCTA16559.938034E-55.16692353
CGATCGG15108.01679E-45.03385263
AGCGATC52000.05.02650741
Produced by FastQC (version 0.11.5)