EGAF00005797556 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005797556
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	79964239
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	13910	0.0	9.736789	1
CGCCGTA	6400	0.0	9.165639	58-59
ATCGGAA	15735	0.0	8.455007	2
GCCGTAT	7735	0.0	7.614425	58-59
CGTATCA	7980	0.0	7.231948	60-61
AGAGCGT	20605	0.0	6.454386	8
AATTCGT	10615	0.0	6.354058	36-37
CCGTATC	9775	0.0	6.1711893	60-61
ATTCGTG	11755	0.0	5.9802856	36-37
GCGTCGT	10275	0.0	5.847761	10-11
TCGGAAG	26875	0.0	5.8165936	3
GAATTCG	12260	0.0	5.791996	34-35
GAGCGTC	22600	0.0	5.737517	9
AAGAGCG	24730	0.0	5.7234645	7
TCGTGTA	13565	0.0	5.304891	38-39
TCGCCGT	11480	0.0	5.2959566	56-57
AGCGTCG	12240	0.0	5.0835934	10-11
CGTCGTG	12255	0.0	5.0775337	12-13