FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005797561

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005797561
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76151367
Sequences flagged as poor quality0
Sequence length101
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATTACTC281350.010.6114321
GATCGGA117550.010.1510821
ATCGGAA144400.08.3551142
TTACTCG69850.08.0241952
TATGCCG87700.07.39273148-49
TCGTATG85350.07.26239244-45
CGTATGC88350.07.230825446-47
CTCGTAT89450.06.876415744-45
TCCGATC76500.06.4572316
ATTAATC266750.06.00601961
TCGGAAG240900.05.4813513
TCTCGTA124450.05.209719742-43
Produced by FastQC (version 0.11.5)